CoV2D Browser

1OAW_1	8ZTZ_1	7YUY_1	Letter	Amino acid
1	32	89	D	Aspartic acid
2	36	100	E	Glutamic acid
4	24	134	I	Isoleucine
3	50	175	L	Leucine
0	18	115	F	Phenylalanine
0	40	97	V	Valine
2	53	138	A	Alanine
1	36	113	S	Serine
0	15	80	Q	Glutamine
0	26	43	H	Histidine
2	39	102	T	Threonine
1	17	99	Y	Tyrosine
1	13	77	N	Asparagine
8	2	33	C	Cysteine
8	61	118	G	Glycine
6	14	82	K	Lycine
2	13	55	M	Methionine
2	32	87	P	Proline
1	8	37	W	Tryptophan
4	40	102	R	Arginine

Protein code \(c\)	LZ-complexity \(\mathrm{LZ}(w)\)	Length \(n=\|w\|\)	\(\frac{\mathrm{LZ}(w)}{n /\log_{20} n}\)	\(p_w(1)\)	\(p_w(2)\)	\(p_w(3)\)	Sequence \(w=f(c)\)
1OAW , Knot	26	48	0.69	32	39	46	KKKCIAKDYGRCKWGGTPCCRGRGCICSIMGTNCECKPRLIMEGLGLA
8ZTZ , Knot	221	569	0.82	40	245	517	MNHKVHHHHHHIEGRHMITKEERAQINADPELGAGNVLHRLRAYGRPTDRPVLWTDGTWRAPDGSHPEVITLGELYEYVETYAGFYHGKGIRPRDVVGVLTASSTEFAINFMAINSLGAIPSFANAKLRPEIAREYIRRQGASGAVTDTERHEVLAGGELGFVVTAEDIRPEHRAQLPQGWPYRHDPTDPIIISHSSGTTGMPKAVPHTHQTLLYAQLHRLKLSVGGSMGRLLVALPGNHNAAMSVMMFGLLLDSPVYLQSSQRGSDVLDAIEKFKPTTVFGFSGTYGQIATSDLSTRDMSSIEAYYNTGDAAHEAHIRVLVAQGSHEEIGPDFKPVRVPGSVFTDGLGSSETGYSIFHNGHKPGSASFGRCIGKPMSFAQAAVLSEDGRPLPAGEVGRLGVRSPTLTPGYWNDSLTWHKLRLGGYWLTGDLAMQDAEGNFYHLDRAPDAIRTEAGIVFSTRTEELLLASLPELADCTVTAIAEEGVRADWDGDGVAEAYVLLQFTDGAREPGDLTGWVNEVLAGQGFPPVTRALRMDSTDVSTGVTGKVLKRVMRERARELVARADQG
7YUY , Knot	645	1876	0.86	40	376	1597	MNTDQQPYQGQTDYTQGPGNGQSQEQDYDQYGQPLYPSQADGYYDPNVAAGTEADMYGQQPPNESYDQDYTNGEYYGQPPNMAAQDGENFSDFSSYGPPGTPGYDSYGGQYTASQMSYGEPNSSGTSTPIYGNYDPNAIAMALPNEPYPAWTADSQSPVSIEQIEDIFIDLTNRLGFQRDSMRNMFDHFMVLLDSRSSRMSPDQALLSLHADYIGGDTANYKKWYFAAQLDMDDEIGFRNMSLGKLSRKARKAKKKNKKAMEEANPEDTEETLNKIEGDNSLEAADFRWKAKMNQLSPLERVRHIALYLLCWGEANQVRFTAECLCFIYKCALDYLDSPLCQQRQEPMPEGDFLNRVITPIYHFIRNQVYEIVDGRFVKRERDHNKIVGYDDLNQLFWYPEGIAKIVLEDGTKLIELPLEERYLRLGDVVWDDVFFKTYKETRTWLHLVTNFNRIWVMHISIFWMYFAYNSPTFYTHNYQQLVDNQPLAAYKWASCALGGTVASLIQIVATLCEWSFVPRKWAGAQHLSRRFWFLCIIFGINLGPIIFVFAYDKDTVYSTAAHVVAAVMFFVAVATIIFFSIMPLGGLFTSYMKKSTRRYVASQTFTAAFAPLHGLDRWMSYLVWVTVFAAKYSESYYFLVLPLRDPIRILSTTAMRCTGEYWWGAVLCKVQPKIVLGLVIATDFILFFLDTYLWYIIVNTIFSVGKSFYLGISILTPWRNIFTRLPKRIYSKILATTDMEIKYKPKVLISQVWNAIIISMYREHLLAIDHVQKLLYHQVPSEIEGKRTLRAPTFFVSQDDNNFETEFFPRDSEAERRISFFAQSLSTPIPEPLPVDNMPTFTVLTPHYAERILLSLREIIREDDQFSRVTLLEYLKQLHPVEWECFVKDTKILAEETAAYEGNENEAEKEDALKSQIDDLPFYCIGFKSAAPEYTLRTRIWASLRSQTLYRTISGFMNYSRAIKLLYRVENPEIVQMFGGNAEGLERELEKMARRKFKFLVSMQRLAKFKPHELENAEFLLRAYPDLQIAYLDEEPPLTEGEEPRIYSALIDGHCEILDNGRRRPKFRVQLSGNPILGDGKSDNQNHALIFYRGEYIQLIDANQDNYLEECLKIRSVLAEFEELNVEQVNPYAPGLRYEEQTTNHPVAIVGAREYIFSENSGVLGDVAAGKEQTFGTLFARTLSQIGGKLHYGHPDFINATFMTTRGGVSKAQKGLHLNEDIYAGMNAMLRGGRIKHCEYYQCGKGRDLGFGTILNFTTKIGAGMGEQMLSREYYYLGTQLPVDRFLTFYYAHPGFHLNNLFIQLSLQMFMLTLVNLSSLAHESIMCIYDRNKPKTDVLVPIGCYNFQPAVDWVRRYTLSIFIVFWIAFVPIVVQELIERGLWKATQRFFCHLLSLSPMFEVFAGQIYSSALLSDLAIGGARYISTGRGFATSRIPFSILYSRFAGSAIYMGARSMLMLLFGTVAHWQAPLLWFWASLSSLIFAPFVFNPHQFAWEDFFLDYRDYIRWLSRGNNQYHRNSWIGYVRMSRARITGFKRKLVGDESEKAAGDASRAHRTNLIMAEIIPCAIYAAGCFIAFTFINAQTGVKTTDDDRVNSVLRIIICTLAPIAVNLGVLFFCMGMSCCSGPLFGMCCKKTGSVMAGIAHGVAVIVHIAFFIVMWVLESFNFVRMLIGVVTCIQCQRLIFHCMTALMLTREFKNDHANTAFWTGKWYGKGMGYMAWTQPSRELTAKVIELSEFAADFVLGHVILICQLPLIIIPKIDKFHSIMLFWLKPSRQIRPPIYSLKQTRLRKRMVKKYCSLYFLVLAIFAGCIIGPAVASAKIHKHIGDSLDGVVHNLFQPINTTNNDTGSQMSTYQSHYYTHTPSLKTWSTIK

Protein code \(c\)

LZ-complexity \(\mathrm{LZ}(w)\)

Length \(n=|w|\)

\(\frac{\mathrm{LZ}(w)}{n /\log_{20} n}\)

\(p_w(1)\)

\(p_w(2)\)

\(p_w(3)\)

Sequence \(w=f(c)\)

1OAW , Knot

0.69

KKKCIAKDYGRCKWGGTPCCRGRGCICSIMGTNCECKPRLIMEGLGLA

8ZTZ , Knot

221

569

0.82

245

517

MNHKVHHHHHHIEGRHMITKEERAQINADPELGAGNVLHRLRAYGRPTDRPVLWTDGTWRAPDGSHPEVITLGELYEYVETYAGFYHGKGIRPRDVVGVLTASSTEFAINFMAINSLGAIPSFANAKLRPEIAREYIRRQGASGAVTDTERHEVLAGGELGFVVTAEDIRPEHRAQLPQGWPYRHDPTDPIIISHSSGTTGMPKAVPHTHQTLLYAQLHRLKLSVGGSMGRLLVALPGNHNAAMSVMMFGLLLDSPVYLQSSQRGSDVLDAIEKFKPTTVFGFSGTYGQIATSDLSTRDMSSIEAYYNTGDAAHEAHIRVLVAQGSHEEIGPDFKPVRVPGSVFTDGLGSSETGYSIFHNGHKPGSASFGRCIGKPMSFAQAAVLSEDGRPLPAGEVGRLGVRSPTLTPGYWNDSLTWHKLRLGGYWLTGDLAMQDAEGNFYHLDRAPDAIRTEAGIVFSTRTEELLLASLPELADCTVTAIAEEGVRADWDGDGVAEAYVLLQFTDGAREPGDLTGWVNEVLAGQGFPPVTRALRMDSTDVSTGVTGKVLKRVMRERARELVARADQG

7YUY , Knot

645

1876

0.86

376

1597

MNTDQQPYQGQTDYTQGPGNGQSQEQDYDQYGQPLYPSQADGYYDPNVAAGTEADMYGQQPPNESYDQDYTNGEYYGQPPNMAAQDGENFSDFSSYGPPGTPGYDSYGGQYTASQMSYGEPNSSGTSTPIYGNYDPNAIAMALPNEPYPAWTADSQSPVSIEQIEDIFIDLTNRLGFQRDSMRNMFDHFMVLLDSRSSRMSPDQALLSLHADYIGGDTANYKKWYFAAQLDMDDEIGFRNMSLGKLSRKARKAKKKNKKAMEEANPEDTEETLNKIEGDNSLEAADFRWKAKMNQLSPLERVRHIALYLLCWGEANQVRFTAECLCFIYKCALDYLDSPLCQQRQEPMPEGDFLNRVITPIYHFIRNQVYEIVDGRFVKRERDHNKIVGYDDLNQLFWYPEGIAKIVLEDGTKLIELPLEERYLRLGDVVWDDVFFKTYKETRTWLHLVTNFNRIWVMHISIFWMYFAYNSPTFYTHNYQQLVDNQPLAAYKWASCALGGTVASLIQIVATLCEWSFVPRKWAGAQHLSRRFWFLCIIFGINLGPIIFVFAYDKDTVYSTAAHVVAAVMFFVAVATIIFFSIMPLGGLFTSYMKKSTRRYVASQTFTAAFAPLHGLDRWMSYLVWVTVFAAKYSESYYFLVLPLRDPIRILSTTAMRCTGEYWWGAVLCKVQPKIVLGLVIATDFILFFLDTYLWYIIVNTIFSVGKSFYLGISILTPWRNIFTRLPKRIYSKILATTDMEIKYKPKVLISQVWNAIIISMYREHLLAIDHVQKLLYHQVPSEIEGKRTLRAPTFFVSQDDNNFETEFFPRDSEAERRISFFAQSLSTPIPEPLPVDNMPTFTVLTPHYAERILLSLREIIREDDQFSRVTLLEYLKQLHPVEWECFVKDTKILAEETAAYEGNENEAEKEDALKSQIDDLPFYCIGFKSAAPEYTLRTRIWASLRSQTLYRTISGFMNYSRAIKLLYRVENPEIVQMFGGNAEGLERELEKMARRKFKFLVSMQRLAKFKPHELENAEFLLRAYPDLQIAYLDEEPPLTEGEEPRIYSALIDGHCEILDNGRRRPKFRVQLSGNPILGDGKSDNQNHALIFYRGEYIQLIDANQDNYLEECLKIRSVLAEFEELNVEQVNPYAPGLRYEEQTTNHPVAIVGAREYIFSENSGVLGDVAAGKEQTFGTLFARTLSQIGGKLHYGHPDFINATFMTTRGGVSKAQKGLHLNEDIYAGMNAMLRGGRIKHCEYYQCGKGRDLGFGTILNFTTKIGAGMGEQMLSREYYYLGTQLPVDRFLTFYYAHPGFHLNNLFIQLSLQMFMLTLVNLSSLAHESIMCIYDRNKPKTDVLVPIGCYNFQPAVDWVRRYTLSIFIVFWIAFVPIVVQELIERGLWKATQRFFCHLLSLSPMFEVFAGQIYSSALLSDLAIGGARYISTGRGFATSRIPFSILYSRFAGSAIYMGARSMLMLLFGTVAHWQAPLLWFWASLSSLIFAPFVFNPHQFAWEDFFLDYRDYIRWLSRGNNQYHRNSWIGYVRMSRARITGFKRKLVGDESEKAAGDASRAHRTNLIMAEIIPCAIYAAGCFIAFTFINAQTGVKTTDDDRVNSVLRIIICTLAPIAVNLGVLFFCMGMSCCSGPLFGMCCKKTGSVMAGIAHGVAVIVHIAFFIVMWVLESFNFVRMLIGVVTCIQCQRLIFHCMTALMLTREFKNDHANTAFWTGKWYGKGMGYMAWTQPSRELTAKVIELSEFAADFVLGHVILICQLPLIIIPKIDKFHSIMLFWLKPSRQIRPPIYSLKQTRLRKRMVKKYCSLYFLVLAIFAGCIIGPAVASAKIHKHIGDSLDGVVHNLFQPINTTNNDTGSQMSTYQSHYYTHTPSLKTWSTIK

Let \(P_w(n)\) be the set of distinct subwords (intervals) in a word \(w\). Let \(p_w(n)\) be the cardinality of \(P_w(n)\). Let \(f(c)\) be the sequence in FASTA with 4-symbol Protein Data Bank code \(c\).

Newick tree

Pair	\(Z_2\)	Length of longest common subsequence
1OAW_1,8ZTZ_1	246	3
1OAW_1,7YUY_1	341	3
8ZTZ_1,7YUY_1	151	5

Status	Protein1	Protein2	d	d₁/2
Query variables	1OAW_1	8ZTZ_1	213	115.5

In notation analogous to [Theorem 16, Kjos-Hanssen, Niraula and Yoon (2022)],
\[ \delta= \alpha \mathrm{min} + (1-\alpha) \mathrm{max}= \begin{cases} d &\alpha=0,\\ d_1/2 &\alpha=1/2 \end{cases} \]

digraph G {
							subgraph cluster_theyellow {
								G [style=filled; fillcolor=yellow];
								A [style=filled; fillcolor=yellow];
								V [style=filled; fillcolor=yellow];
								C [style=filled; fillcolor=yellow];
								P [style=filled; fillcolor=yellow];
								L [style=filled; fillcolor=yellow];
								I [style=filled; fillcolor=yellow];
								M [style=filled; fillcolor=yellow];
								W [style=filled; fillcolor=yellow];
								F [style=filled; fillcolor=yellow];
							}
							subgraph cluster_thegreen {
								K [style=filled; fillcolor=green];
								R [style=filled; fillcolor=green];
								H [style=filled; fillcolor=green];
							}
							subgraph cluster_theblue {
								S [style=filled; fillcolor=blue];
								T [style=filled; fillcolor=blue];
								Y [style=filled; fillcolor=blue];
								N [style=filled; fillcolor=blue];
								Q [style=filled; fillcolor=blue];
							}
							subgraph cluster_thepurple {
								D [style=filled; fillcolor=purple];
								E [style=filled; fillcolor=purple];
							}
		
							K->K
							K->C
							C->I
							I->A
							A->K
							K->D
							D->Y
							Y->G
							G->R
							R->C
							C->K
							K->W
							W->G
							G->G
							G->T
							T->P
							P->C
							C->C
							C->R
							R->G
							G->C
							I->C
							C->S
							S->I
							I->M
							M->G
							T->N
							N->C
							C->E
							E->C
							K->P
							P->R
							R->L
							L->I
							M->E
							E->G
							G->L
							L->G
							L->A
						}

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CoV2D BrowserTM

Newick tree

CoV2D Browser^TM